Author Archives: ijgvd4

Maintenance

iJGVD will be unavailable in the following period due to the maintenance.

Date: Mar 21st (Mon), 2016
Time: 10:45-15:30 (Japan Standard Time)

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Maintenance

iJGVD will be unavailable in the following period due to the maintenance.

Date: Jan 29th (Fri), 2016
Time: 12:00-13:00 (Japan Standard Time)

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New feature: “Probe locations for Japonica Array”

We recently designed a genotyping chip, “Japonica Array”, which was optimized for the Japanese population (Kawai et al. 2015). The probe locations for Japonica Array on autosomes are shown in the genome browser in iJGVD. Please use “full screen view” of the genome browser, and check the box for “japonica array probe site” in the available tracks.

Publication: Yosuke Kawai, Takahiro Mimori, Kaname Kojima, Naoki Nariai, Inaho Danjo, Rumiko Saito, Jun Yasuda, Masayuki Yamamoto and Masao Nagasaki (2015) “Japonica array: improved genotype imputation by designing a population-specific SNP array with 1070 Japanese individuals” Journal of Human Genetics (AOP)
http://www.nature.com/jhg/journal/vaop/ncurrent/full/jhg201568a.html

See also:
SNP list of Japonica array
http://nagasakilab.csml.org/en/japonica-snp-list

Maintenance

iJGVD will be unavailable in the following period due to the maintenance.

Date: May 11th (Mon), 2015
Time: 10:00-11:00 (Japan Standard Time)

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Maintenance

iJGVD will be unavailable in the following period due to the maintenance.

Date: February 4th (Wed), 2015
Time: 10:00-12:00 (Japan Standard Time)

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