Statistics (3.5KJPN, all)

See also related information in our publications.

  1. Nagasaki et al. (2015) “Rare variant discovery by deep whole-genome sequencing of 1,070 Japanese individuals” Nature Communications Volume:6, Article number: 8018 DOI:doi:10.1038/ncomms9018
  2. Yamaguchi-Kabata et al. (2015) “iJGVD: an integrative Japanese genome variation database based on whole-genome sequencing” Human Genome Variation 2, Article number: 15050 (2015) doi:10.1038/hgv.2015.50
Property of subjects
age ~20s 30s 40s 50s 60s 70s 80s~ NA total
male 66 185 124 219 627 312 7 13 1,553
female 173 329 243 402 654 194 5 1 2,001
total 239 514 367 621 1,281 506 12 14 3,554

 

Number of variants per chromosome
CHROMOSOME NUMBER OF
VARIANTS
(Passed)
NUMBER OF
VARIANTS
(Filtered)
NUMBER OF
VARIANTS
(Multi-allelic)
TOTAL
chr1 2,884,278 1,126,411 12,236 4,022,925
chr2 3,331,593 971,107 14,368 4,317,068
chr3 2,789,869 768,475 12,164 3,570,508
chr4 2,731,153 704,013 11,845 3,447,011
chr5 2,535,860 670,105 11,073 3,217,038
chr6 2,361,229 702,554 10,054 3,073,837
chr7 2,128,098 760,654 9,519 2,898,271
chr8 2,152,623 603,342 10,754 2,766,719
chr9 1,625,856 583,585 7,551 2,216,992
chr10 1,808,709 631,876 8,155 2,448,740
chr11 1,882,222 583,021 8,691 2,473,934
chr12 1,751,016 634,883 7,540 2,393,439
chr13 1,377,902 356,143 5,669 1,739,714
chr14 1,205,988 423,159 5,297 1,634,444
chr15 1,079,246 427,943 4,811 1,512,000
chr16 1,117,876 574,898 6,281 1,699,055
chr17 902,901 586,579 4,000 1,493,480
chr18 1,072,495 290,186 4,633 1,367,314
chr19 592,143 669,053 2,969 1,264,165
chr20 806,137 323,187 3,549 1,132,873
chr21 492,066 198,046 2,158 692,270
chr22 438,455 277,603 2,122 718,180
total 37,067,715 12,866,823 165,439 50,099,977