Statistics (3.5KJPN, >=1%)

See also related information in our publications.

  1. Nagasaki et al. (2015) “Rare variant discovery by deep whole-genome sequencing of 1,070 Japanese individuals” Nature Communications Volume:6, Article number: 8018 DOI:doi:10.1038/ncomms9018
  2. Yamaguchi-Kabata et al. (2015) “iJGVD: an integrative Japanese genome variation database based on whole-genome sequencing” Human Genome Variation 2, Article number: 15050 (2015) doi:10.1038/hgv.2015.50
Property of subjects
age ~20s 30s 40s 50s 60s 70s 80s~ NA total
male 66 185 124 219 627 312 7 13 1,553
female 173 329 243 402 654 194 5 1 2,001
total 239 514 367 621 1,281 506 12 14 3,554

 

Number of variants per chromosome
CHROMOSOME NUMBER OF
VARIANTS
(Passed)
NUMBER OF
VARIANTS
(Filtered)
NUMBER OF
VARIANTS
(Multi-allelic)
TOTAL
chr1 453,427 167,062 2,750 623,239
chr2 505,313 142,633 3,259 651,205
chr3 445,991 115,419 2,925 564,335
chr4 449,889 120,700 2,854 573,443
chr5 398,651 101,920 2,583 503,154
chr6 402,365 124,399 2,491 529,255
chr7 341,845 123,577 2,271 467,693
chr8 334,666 93,308 2,447 430,421
chr9 260,058 94,781 1,816 356,655
chr10 299,324 100,787 1,945 402,056
chr11 297,456 87,311 1,977 386,744
chr12 282,528 94,880 1,788 379,196
chr13 226,157 58,462 1,272 285,891
chr14 197,051 65,688 1,266 264,005
chr15 170,025 67,635 1,102 238,762
chr16 166,740 81,456 1,445 249,641
chr17 133,854 76,413 840 211,107
chr18 176,632 47,749 1,138 225,519
chr19 93,571 92,235 658 186,464
chr20 124,962 43,957 812 169,731
chr21 83,213 37,066 556 120,835
chr22 70,875 40,849 504 112,228
total 5,914,593 1,978,287 38,699 7,931,579